publications

publications by categories in reversed chronological order. generated by jekyll-scholar.

2025

  1. Epigenetic age acceleration and midlife cognition: joint evidence from observational study and Mendelian randomization
    Yang Pan, Zhijie Huang, Xiao Sun, and 8 more authors
    npj Aging, 2025

2024

  1. Associations of epigenetic age acceleration with CVD risks across the lifespan: the Bogalusa Heart Study
    Xiao Sun, Wei Chen, Alexander C Razavi, and 8 more authors
    JACC Basic to translational science, 2024
  2. Clonal hematopoiesis of indeterminate potential is associated with reduced risk of cognitive impairment in patients with chronic kidney disease
    Cissy Xiao, Manjula Kurella Tamura, Yang Pan, and 8 more authors
    Alzheimer’s & Dementia, 2024
  3. Elucidating the role of clonal hematopoiesis in acute kidney injury
    Yang Pan, Xiao Sun, and Tanika N Kelly
    Kidney international, 2024
  4. Novel metabolites associated with blood pressure after dietary interventions
    Yixi Sun, Ruiyuan Zhang, Ling Tian, and 8 more authors
    Hypertension, 2024
  5. TARGETING ALTERNATIVE SPLICING VARIANTS TO STIMULATE ANTI-TUMOR IMMUNITY IN A NOVEL SYNGENEIC MOUSE MODEL OF DIFFUSE HEMISPHERIC GLIOMA, H3 G34-MUTANT
    Anthony Wang, Geoffrey Owens, Yang Pan, and 8 more authors
    In NEURO-ONCOLOGY, 2024
  6. Association of Clonal Hematopoiesis of Indeterminate Potential with Cardiovascular Events in Patients with CKD
    Yang Pan, Caitlyn Vlasschaert, Varun Rao, and 8 more authors
    Journal of the American Society of Nephrology, 2024
  7. Clonal Hematopoiesis of Indeterminate Potential and Progression of CKD
    Caitlyn Vlasschaert, Yang Pan, Jianchun Chen, and 8 more authors
    Journal of the American Society of Nephrology, 2024
  8. The causal relationship between sleep and risk of psychiatric disorders: A two-sample mendelian randomization study
    Pei Chen, Jiuhang Qin, Yueying Wang, and 3 more authors
    Frontiers in Genetics, 2024

2023

  1. IRIS: Discovery of cancer immunotherapy targets arising from pre-mRNA alternative splicing
    Yang Pan, John W Phillips, Beatrice D Zhang, and 8 more authors
    Proceedings of the National Academy of Sciences, 2023
  2. Whole-exome sequencing study identifies four novel gene loci associated with diabetic kidney disease
    Yang Pan, Xiao Sun, Xuenan Mi, and 8 more authors
    Human molecular genetics, 2023
  3. Emerging evidence on the role of clonal hematopoiesis of indeterminate potential in chronic kidney disease
    Zhijie Huang, Caitlyn Vlasschaert, Cassianne Robinson-Cohen, and 5 more authors
    Translational Research, 2023
  4. Effects of epigenetic age acceleration on kidney function: a Mendelian randomization study
    Yang Pan, Xiao Sun, Zhijie Huang, and 5 more authors
    Clinical Epigenetics, 2023
  5. Genomic innovation in early life cardiovascular disease prevention and treatment
    Changwei Li, Yang Pan, Ruiyuan Zhang, and 7 more authors
    Circulation research, 2023
  6. A longitudinal study of polygenic score and cognitive function decline considering baseline cognitive function, lifestyle behaviors, and diabetes among middle-aged and older US adults
    Tingting Liu, Changwei Li, Ruiyuan Zhang, and 8 more authors
    Alzheimer’s Research & Therapy, 2023

2022

  1. Life-course associations between blood pressure-related polygenic risk scores and hypertension in the bogalusa heart study
    Xiao Sun, Yang Pan, Ruiyuan Zhang, and 8 more authors
    Genes, 2022
  2. Insights from a large-scale whole-genome sequencing study of systolic blood pressure, diastolic blood pressure, and hypertension
    Tanika N Kelly, Xiao Sun, Karen Y He, and 8 more authors
    Hypertension, 2022
  3. Examination of serum metabolome altered by cigarette smoking identifies novel metabolites mediating smoking-BMI association
    Ruiyuan Zhang, Xiao Sun, Zhijie Huang, and 8 more authors
    Obesity, 2022
  4. Revisiting the effects of blood pressure on kidney function: new insights from a mendelian randomization analysis
    Dipender Gill, Yang Pan, James P Lash, and 1 more author
    2022

2021

  1. RNA dysregulation: an expanding source of cancer immunotherapy targets
    Yang Pan, Kathryn E Kadash-Edmondson, Robert Wang, and 6 more authors
    Trends in pharmacological sciences, 2021

2020

  1. Pathway-guided analysis identifies Myc-dependent alternative pre-mRNA splicing in aggressive prostate cancers
    John W Phillips, Yang Pan, Brandon L Tsai, and 8 more authors
    Proceedings of the National Academy of Sciences, 2020
  2. Cancer Moonshot Immuno-Oncology Translational Network (IOTN): accelerating the clinical translation of basic discoveries for improving immunotherapy and immunoprevention of cancer
    Ananth Annapragada, Andrew Sikora, Catherine Bollard, and 8 more authors
    Journal for immunotherapy of cancer, 2020
  3. Regional variation of splicing QTLs in human brain
    Yida Zhang, Harry Taegyun Yang, Kathryn Kadash-Edmondson, and 4 more authors
    The american journal of human genetics, 2020
  4. Detecting allele-specific alternative splicing from population-scale RNA-seq data
    Levon Demirdjian, Yungang Xu, Emad Bahrami-Samani, and 6 more authors
    The American Journal of Human Genetics, 2020

2018

  1. Loss and gain of N-linked glycosylation sequons due to single-nucleotide variation in cancer
    Yu Fan, Yu Hu, Cheng Yan, and 4 more authors
    Scientific reports, 2018
  2. Impact of signal peptide mutations on secreted glycoproteins
    Zuzana Brnakova Kennedy, Miloslav Sanda, Yang Pan, and 2 more authors
    In GLYCOBIOLOGY, 2018

2017

  1. Impact of germline and somatic missense variations on drug binding sites
    C Yan, N Pattabiraman, J Goecks, and 7 more authors
    The Pharmacogenomics Journal, 2017
  2. Distribution bias analysis of germline and somatic single-nucleotide variations that impact protein functional site and neighboring amino acids
    Yang Pan, Cheng Yan, Yu Hu, and 5 more authors
    Scientific reports, 2017
  3. rMATS-DVR: rMATS discovery of differential variants in RNA
    Jinkai Wang, Yang Pan, Shihao Shen, and 2 more authors
    Bioinformatics, 2017

2016

  1. High-performance integrated virtual environment (HIVE): a robust infrastructure for next-generation sequence data analysis
    Vahan Simonyan, Konstantin Chumakov, Hayley Dingerdissen, and 8 more authors
    Database, 2016

2015

  1. BioXpress: an integrated RNA-seq-derived gene expression database for pan-cancer analysis
    Quan Wan, Hayley Dingerdissen, Yu Fan, and 6 more authors
    Database, 2015
  2. Generating a focused view of disease ontology cancer terms for pan-cancer data integration and analysis
    Tsung-Jung Wu, Lynn M Schriml, Qing-Rong Chen, and 8 more authors
    Database, 2015

2014

  1. A framework for organizing cancer-related variations from existing databases, publications and NGS data using a High-performance Integrated Virtual Environment (HIVE)
    Tsung-Jung Wu, Amirhossein Shamsaddini, Yang Pan, and 4 more authors
    Database, 2014
  2. Non-synonymous variations in cancer and their effects on the human proteome: workflow for NGS data biocuration and proteome-wide analysis of TCGA data
    Charles Cole, Konstantinos Krampis, Konstantinos Karagiannis, and 8 more authors
    BMC bioinformatics, 2014
  3. Human germline and pan-cancer variomes and their distinct functional profiles
    Yang Pan, Konstantinos Karagiannis, Haichen Zhang, and 5 more authors
    Nucleic acids research, 2014
  4. A framework for application of metabolic modeling in yeast to predict the effects of nsSNV in human orthologs
    Hayley Dingerdissen, Daniel S Weaver, Peter D Karp, and 3 more authors
    Biology Direct, 2014
  5. Census-based rapid and accurate metagenome taxonomic profiling
    Amirhossein Shamsaddini, Yang Pan, W Evan Johnson, and 5 more authors
    BMC genomics, 2014

2012

  1. Microwave-assisted enzymatic resolution of (R, S)-2-octanol in ionic liquid
    Dahai Yu, Dongxiao Ma, Zhi Wang, and 3 more authors
    Process Biochemistry, 2012
  2. Combination use of ultrasound irradiation and ionic liquid in enzymatic isomerization of glucose to fructose
    Yu Wang, Yang Pan, Zeqiang Zhang, and 3 more authors
    Process Biochemistry, 2012